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The National Ecological Observatory Network (NEON) is a long-term monitoring program at the continental scale designed to understand and forecast ecological responses to environmental change at local to broad scales. However, despite robust and nearly continuous collections, NEON mosquito data have been underused in downstream analyses. Here, we provide species-level estimated abundances for nighttime collected female mosquitoes derived from the mosquitoes sampled from CO2 traps (DP1.10043.001) (RELEASE-2024; NEON, 2024). By including zero counts, our derived data complement existing data sets and provide an analysis-ready time series useful for investigating mosquito phenology, abundances, and diversity at the species or community level. We also outline a set of considerations specific to filtering NEON mosquito data by sex and for day or nighttime collections, highlighting factors that could introduce uncertainty to abundance estimates. Along with the data set, we provide an R Markdown file that includes annotated code and documents our data filtering and QC/QA steps, as well as data files used to filter the mosquito data based on QC/QA criteria. All files are freely available for download through the Environmental Data Initiative data portal. Our reproducible and fully documented workflow can be easily adapted for specific needs or other NEON surveillance data. Our work aims to enhance the accessibility and use of NEON’s rich, long-term monitoring data.more » « less
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Abstract Plant phenology plays a fundamental role in shaping ecosystems, and global change‐induced shifts in phenology have cascading impacts on species interactions and ecosystem structure and function. Detailed, high‐quality observations of when plants undergo seasonal transitions such as leaf‐out, flowering and fruiting are critical for tracking causes and consequences of phenology shifts, but these data are often sparse and biased globally. These data gaps limit broader generalizations and forecasting improvements in the face of continuing disturbance. One solution to closing such gaps is to document phenology on field images taken by public participants. iNaturalist, in particular, provides global‐scale research‐grade data and is expanding rapidly.Here we utilize over 53 million field images of plants and millions of human annotations from iNaturalist—data spanning all angiosperms and drawn from across the globe—to train a computer vision model (PhenoVision) to detect the presence of fruits and flowers. PhenoVision utilizes a vision transformer architecture pretrained with a masked autoencoder to improve classification success, and it achieves high accuracy on held‐out test images for flower (98.5%) and fruit presence (95%), as well as a high level of agreement with an expert annotator (98.6% for flowers and 90.4% for fruits).Key to producing research‐ready phenology data is post‐calibration tuning and validation focused on reducing noise inherent in field photographs, and maximizing the true positive rate. We also develop a standardized set of quality metrics and metadata so that results can be used effectively by the community. Finally, we showcase how this effort vastly increases phenology data coverage, including regions of the globe where data have been limited before.Our end products are tuned models, new data resources and an application streamlining discovery and use of those data for the broader research and management community. We close by discussing next steps, including automating phenology annotations, adding new phenology targets, for example leaf phenology, and further integration with other resources to form a global central database integrating all in situ plant phenology resources.more » « less
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Abstract Climatic change is dramatically altering phenology but generalities regarding tempo and mode of response remain limited. Here we present a general model framework incorporating spring temperature, velocity of spring warming, and species’ thermal requirements for predicting phenological response to warming. A key prediction of this framework is that species active earlier in the season and located in warmer regions where spring temperature velocity is lowest show strongest sensitivity to climatic change and greatest advancement in response to warming. We test this prediction using plant phenology datasets collected in the 1850s and 2010s. Our results strikingly confirm model predictions, showing that while temperature sensitivity is higher in regions with low temperature velocity, the greatest realized change in phenological onset is northern areas where warming rates have been fastest. Our framework offers enhanced utility for predicting phenological sensitivity and responsiveness in temperate regions and across multiple plant species and potentially other groups.more » « less
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This Level 2 data package contains species level estimated abundances, including zero counts, and estimated mean number of female mosquitoes per trap derived from the NEON Mosquitoes sampled from CO2 traps (DP1.10043.001), RELEASE-2024 Level 0 data (https://doi.org/10.48443/3cyq-6v47). The data set includes mosquito records of traps collecting mosquito samples at night, for up to 24 trap hours, across a total of 20 terrestrial core and 27 terrestrial gradient sites from 2014 to 2022. To ensure high confidence in abundance estimates, records were only included when at least 90% of collected individuals were identified to sex, and 90% of female specimens were identified to species. Information across multiple QC/QA fields within the NEON mosquito data was evaluated to identify and exclude records where confidence in estimated abundances may have been compromised. Species level zero counts were added for all species collected at least once within the sampling year and trap location. Additionally, species level zero counts were included for trap events where only male mosquitoes had been collected or where QC/QA remarks indicated traps were inactive due to cold temperatures. The data set provides an analysis ready time series of estimated abundances across NEON sites and plots. An R Markdown file that contains descriptions of the QC/QA and data filtering steps along with annotated code, as well as data tables used to filter active and inactive trap events based on QC/QA fields, are published with the data package. Any questions about this data package should be directed to Amely Bauer listed under contacts.more » « less
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It was shown in [10] that that there exist strongly dense free subgroups in any semisimple algebraic group over a large enough field. These are nonabelian free subgroups all of whose subgroups are either cyclic or Zariski-dense. Here we show that the same is true for as long as the transcendence degree of the field is at least 1 in characteristic 0 and transcendence degree at least 2 in positive characteristic.more » « less
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Elaborate traits evolve via intense selective pressure, overpowering ecological constraints. Hindwing tails that thwart bat attack have repeatedly originated in moon moths (Saturniidae), with longer tails having greater anti-predator effect. Here, we take a macroevolutionary approach to evaluate the evolutionary balance between predation pressure and possible limiting environmental factors on tail elongation. To trace the evolution of tail length across time and space, we inferred a time-calibrated phylogeny of the entirely tailed moth group (Actias + Argema) and performed ancestral state reconstruction and biogeographical analyses. We generated metrics of predation via estimates of bat abundance from nearly 200 custom-built species distribution models and environmental metrics via estimates of bioclimatic variables associated with individual moth observations. To access community science data, we developed a novel method for measuring wing lengths from un-scaled photos. Integrating these data into phylogenetically informed mixed models, we find a positive association between bat predation pressure and moth tail length and body size, and a negative association between environmental factors and these morphological traits. Regions with more insectivorous bats and more consistent temperatures tend to host longer-tailed moths. Our study provides insight into tradeoffs between biotic selective pressures and abiotic constraints that shape elaborate traits across the tree of life.more » « less
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Abstract PremiseOne of the slowest steps in digitizing natural history collections is converting labels associated with specimens into a digital data record usable for collections management and research. Here, we address how herbarium specimen labels can be converted into digital data records via extraction into standardized Darwin Core fields. MethodsWe first showcase the development of a rule‐based approach and compare outcomes with a large language model–based approach, in particular ChatGPT4. We next quantified omission and commission error rates across target fields for a set of labels transcribed using optical character recognition (OCR) for both approaches. For example, we find that ChatGPT4 often creates field names that are not Darwin Core compliant while rule‐based approaches often have high commission error rates. ResultsOur results suggest that these approaches each have different strengths and limitations. We therefore developed an ensemble approach that leverages the strengths of each individual method and documented that ensembling strongly reduced overall information extraction errors. DiscussionThis work shows that an ensemble approach has particular value for creating high‐quality digital data records, even for complicated label content. While human validation is still needed to ensure the best possible quality, automated approaches can speed digitization of herbarium specimen labels and are likely to be broadly usable for all natural history collection types.more » « less
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Abstract Insects often exhibit irruptive population dynamics determined by environmental conditions. We examine if populations of theCulex tarsalismosquito, a West Nile virus (WNV) vector, fluctuate synchronously over broad spatial extents and multiple timescales and whether climate drives synchrony inCx. tarsalis, especially at annual timescales, due to the synchronous influence of temperature, precipitation, and/or humidity. We leveraged mosquito collections across 9 National Ecological Observatory Network (NEON) sites distributed in the interior West and Great Plains region USA over a 45-month period, and associated gridMET climate data. We utilized wavelet phasor mean fields and wavelet linear models to quantify spatial synchrony for mosquitoes and climate and to calculate the importance of climate in explainingCx. tarsalissynchrony. We also tested whether the strength of spatial synchrony may vary directionally across years. We found significant annual synchrony inCx. tarsalis, and short-term synchrony during a single period in 2018. Mean minimum temperature was a significant predictor of annualCx. tarsalisspatial synchrony, and we found a marginally significant decrease in annualCx. tarsalissynchrony. SignificantCx. tarsalissynchrony during 2018 coincided with an anomalous increase in precipitation. This work provides a valuable step toward understanding broadscale synchrony in a WNV vector.more » « less
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